Evaluation of the structural quality of modeled proteins by using globularity criteria

BMC Structural Biology

Table 4 Target proteins used as testing dataset.

Target	Class	PDB code	Score value for PDB structures	Number of models	Percentage of models with score ≥ 5.9 or ≥ 5.1
T0198	mainly-alpha	1SUM_3-223	5.1	154	90.9
T0238	mainly-alpha	1W33_70-222	5.8	154	86.4
T0209_1	mainly-beta	1XQB_9-138	3.11	152	87.6
T0212	mainly-beta	1TZA_3-121	3.4	182	41.2
T0199_3	alpha+beta	1STZ_145-226	2.10	223	50.7
T0201	alpha+beta	1S12_1-90	1.6	204	20.6
T0209_2	alpha+beta	1XQB_159-231	2.35	229	41
T0216_1	alpha+beta	1VL4_2-214	4.3	155	93.5
T0216_2	alpha+beta	1VL4_221-433	3.3	147	95.3
T0239	alpha+beta	1RKI_1-98	1.8	251	29.1
T0248_2	alpha+beta	1TD6_107-193	2.9	239	32.6
T0242	alpha/beta	2BLK_2-116	3.1	200	43
T0273	alpha/beta	1WDJ_2-187	1.2	141	90

The columns report the target codes, structural class, code of the experimental structure deposited in the PDB with the segment analyzed, their score value, the number of full-atom models analyzed in this work, and the percentage of models for which the score value resulted over the threshold (i.e. ≥ 5.9 for "mainly-alpha" and "mainly-beta" proteins and ≥ 5.1 for "alpha/beta" and "alpha+beta" proteins).

ISSN: 1472-6807