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Table 1 Percentage of modified structural letters in the complex set

From: Structural deformation upon protein-protein interaction: A structural alphabet approach

 

Type of complex

 

Enzyme-substrate

Antibody-antigen

Others

All types

rmsd rangea

N C b MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeeOta40aa0baaSqaaiabdoeadbqaaiabdkgaIbaaaaa@2F81@

N T c MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeeOta40aa0baaSqaaiabdsfaubqaaiabdogaJbaaaaa@2FA5@

%d

N C

N T

%

N C

N T

%

N C

N T

%

less than 1 Å

29

5145

29%

17

2937

22%

45

8358

34%

91

16440

30%

1 to 2 Å

18

2786

36%

11

2539

38%

28

6245

42%

57

11570

40%

2 to 3 Å

4

509

42%

0

-

-

11

2485

47%

15

2994

46%

more than 3 Å

0

-

-

2

425

29%

6

927

61%

8

1352

51%

All rmsd

51

8440

32%

30

5901

29%

90

18015

40%

171

32356

36%

Control set

19

4072

28%

         
  1. a: Cα root mean square deviation between bound and unbound conformations, b: number of protein chains involved, c: total number of structural letters involved, d: percentage of structural letters that differ between bound and unbound conformation.
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BMC Structural Biology

ISSN: 1472-6807

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