A knowledge-based structure-discriminating function that requires only main-chain atom coordinates

BMC Structural Biology

Table 2 Summary of performance of the DFMAC function on the training and test decoy sets.

target set	N_all	N_n	N_nn	C_αRMSD	Z-score	C.C.	F.E.(%)	R_B1	logP_B1	R_B10	logP_B10	C.C._decoy	F.E._decoy(%)
training set	154	115	135	0.764	2.552	0.539	38.9	171.3	-0.78	36.1	-1.38	0.499	27.6
test set	77	59	68	1.174	2.630	0.559	38.7	164.0	-0.75	15.8	-1.41	0.518	25.1

Summarized values are shown by the respective decoy sets. The numbers of total target proteins evaluated (N_all), and correct identification of the native (N_n) or near-native (C_αRMSD < 2 Å) (N_nn) structures are shown. The C_αRMSD, Z-score, C.C., F.E., R_B1, logP_B1, R_B10, logP_B10, C.C._decoy, F.E._decoy are the average of the respective scores of the target proteins evaluated. The definition of each index is described in Methods.

ISSN: 1472-6807