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Table 4 Comparison of the function performances.

From: A knowledge-based structure-discriminating function that requires only main-chain atom coordinates

decoy set protein DFIRE-A DFIRE-B DOPE RAPDF PC2CA DFMAC
4state_reduced 1ctf 1 1 1 1 1 1
4state_reduced 2cro 1 2 1 1 1 1
4state_reduced 4rxn 1 19 1 1 667 1
fisa 2cro 1 1 1 14 1 1
fisa_casp3 1bl0 1 3 1 1 1 8
lattice_ssfit 1dkt-A 1 1 1 1 1 1
lattice_ssfit 1pgb 1 1 1 1 1 1
lmds 1b0n-B 430 261 34 359 1 1
lmds 1dtk 1 5 1 116 2 70
lmds 1shf-A 1 1 1 1 1 1
lmds 4pti 1 1 1 157 1 3
average   40.0 26.9 4.0 59.4 61.6 8.1
correct   10 6 10 7 9 8
  1. The rank of the native structure identified by respective functions is shown for the targets listed. The results of DFIRE-A, DFIRE-B and RAPDF were from the literature [7]. The results of DOPE were from [15]. The results of PC2CA were from [16]. The average rank (average) and the number of correctly identified native structures (correct) in 11 targets are shown.