| |
ALA
|
ARG
|
ASN
|
ASP
|
CYS
|
GLN
|
GLU
|
GLY
|
HIS
|
ILE
|
LEU
|
LYS
|
MET
|
PHE
|
PRO
|
SER
|
THR
|
TRP
|
TYR
|
VAL
|
|---|
|
ALA
|
0.27
|
-0.12
|
-0.19
|
-0.23
|
-0.06
|
-0.21
|
-0.39
|
0.11
|
-0.01
|
0.32
|
0.31
|
-0.42
|
0.00
|
0.26
|
-0.05
|
-0.05
|
0.05
|
0.12
|
0.19
|
0.35
|
|
ARG
| |
-0.33
|
-0.38
|
-0.24
|
-0.30
|
-0.43
|
-0.36
|
-0.15
|
-0.22
|
-0.03
|
0.00
|
-0.72
|
-0.31
|
-0.01
|
-0.18
|
-0.27
|
-0.22
|
-0.10
|
-0.03
|
-0.01
|
|
ASN
| | |
-0.04
|
-0.30
|
-0.28
|
-0.34
|
-0.57
|
-0.09
|
-0.19
|
-0.02
|
-0.14
|
-0.47
|
-0.30
|
-0.01
|
-0.20
|
-0.13
|
-0.09
|
-0.10
|
0.02
|
-0.07
|
|
ASP
| | | |
-0.44
|
-0.41
|
-0.48
|
-0.70
|
-0.18
|
-0.19
|
-0.14
|
-0.22
|
-0.43
|
-0.44
|
-0.15
|
-0.29
|
-0.28
|
-0.24
|
-0.19
|
-0.08
|
-0.15
|
|
CYS
| | | | |
0.67
|
-0.33
|
-0.63
|
-0.08
|
-0.02
|
0.15
|
0.12
|
-0.57
|
-0.06
|
0.19
|
-0.19
|
-0.13
|
-0.11
|
0.03
|
0.07
|
0.14
|
|
GLN
| | | | | |
-0.36
|
-0.67
|
-0.26
|
-0.27
|
-0.10
|
-0.09
|
-0.64
|
-0.34
|
-0.08
|
-0.26
|
-0.28
|
-0.23
|
-0.13
|
-0.08
|
-0.11
|
|
GLU
| | | | | | |
-0.77
|
-0.45
|
-0.39
|
-0.23
|
-0.27
|
-0.53
|
-0.57
|
-0.27
|
-0.46
|
-0.51
|
-0.44
|
-0.38
|
-0.23
|
-0.25
|
|
GLY
| | | | | | | |
0.16
|
0.02
|
0.16
|
0.08
|
-0.43
|
-0.10
|
0.15
|
-0.04
|
-0.01
|
0.04
|
0.08
|
0.14
|
0.19
|
|
HIS
| | | | | | | | |
0.16
|
0.09
|
0.07
|
-0.55
|
-0.11
|
0.16
|
-0.08
|
-0.05
|
-0.03
|
0.11
|
0.16
|
0.09
|
|
ILE
| | | | | | | | | |
0.71
|
0.55
|
-0.13
|
0.24
|
0.55
|
-0.03
|
0.09
|
0.20
|
0.28
|
0.43
|
0.58
|
|
LEU
| | | | | | | | | | |
0.58
|
-0.26
|
0.15
|
0.49
|
-0.01
|
0.02
|
0.12
|
0.27
|
0.35
|
0.51
|
|
LYS
| | | | | | | | | | | |
-0.63
|
-0.56
|
-0.23
|
-0.49
|
-0.47
|
-0.41
|
-0.45
|
-0.20
|
-0.22
|
|
MET
| | | | | | | | | | | | |
0.24
|
0.25
|
-0.23
|
-0.20
|
-0.11
|
0.09
|
0.14
|
0.16
|
|
PHE
| | | | | | | | | | | | | |
0.60
|
0.04
|
0.10
|
0.16
|
0.39
|
0.47
|
0.48
|
|
PRO
| | | | | | | | | | | | | | |
-0.04
|
-0.15
|
-0.11
|
0.06
|
0.09
|
0.02
|
|
SER
| | | | | | | | | | | | | | | |
-0.04
|
-0.03
|
0.01
|
0.07
|
0.07
|
|
THR
| | | | | | | | | | | | | | | | |
0.06
|
0.05
|
0.13
|
0.21
|
|
TRP
| | | | | | | | | | | | | | | | | |
0.48
|
0.35
|
0.26
|
|
TYR
| | | | | | | | | | | | | | | | | | |
0.42
|
0.37
|
|
VAL
| | | | | | | | | | | | | | | | | | | |
0.59
|
- An example of one of the contact-type scoring matrices used in this work. The scores are defined as described in the Methods Section. In this matrix residue-residue contacts were defined using a 12 Å distance threshold between C
β
atoms and using a sequence separation filter to remove short-range interactions.
