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Table 1 An example of data from a contact-type scoring matrix

From: Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys

  ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL
ALA 0.27 -0.12 -0.19 -0.23 -0.06 -0.21 -0.39 0.11 -0.01 0.32 0.31 -0.42 0.00 0.26 -0.05 -0.05 0.05 0.12 0.19 0.35
ARG   -0.33 -0.38 -0.24 -0.30 -0.43 -0.36 -0.15 -0.22 -0.03 0.00 -0.72 -0.31 -0.01 -0.18 -0.27 -0.22 -0.10 -0.03 -0.01
ASN    -0.04 -0.30 -0.28 -0.34 -0.57 -0.09 -0.19 -0.02 -0.14 -0.47 -0.30 -0.01 -0.20 -0.13 -0.09 -0.10 0.02 -0.07
ASP     -0.44 -0.41 -0.48 -0.70 -0.18 -0.19 -0.14 -0.22 -0.43 -0.44 -0.15 -0.29 -0.28 -0.24 -0.19 -0.08 -0.15
CYS      0.67 -0.33 -0.63 -0.08 -0.02 0.15 0.12 -0.57 -0.06 0.19 -0.19 -0.13 -0.11 0.03 0.07 0.14
GLN       -0.36 -0.67 -0.26 -0.27 -0.10 -0.09 -0.64 -0.34 -0.08 -0.26 -0.28 -0.23 -0.13 -0.08 -0.11
GLU        -0.77 -0.45 -0.39 -0.23 -0.27 -0.53 -0.57 -0.27 -0.46 -0.51 -0.44 -0.38 -0.23 -0.25
GLY         0.16 0.02 0.16 0.08 -0.43 -0.10 0.15 -0.04 -0.01 0.04 0.08 0.14 0.19
HIS          0.16 0.09 0.07 -0.55 -0.11 0.16 -0.08 -0.05 -0.03 0.11 0.16 0.09
ILE           0.71 0.55 -0.13 0.24 0.55 -0.03 0.09 0.20 0.28 0.43 0.58
LEU            0.58 -0.26 0.15 0.49 -0.01 0.02 0.12 0.27 0.35 0.51
LYS             -0.63 -0.56 -0.23 -0.49 -0.47 -0.41 -0.45 -0.20 -0.22
MET              0.24 0.25 -0.23 -0.20 -0.11 0.09 0.14 0.16
PHE               0.60 0.04 0.10 0.16 0.39 0.47 0.48
PRO                -0.04 -0.15 -0.11 0.06 0.09 0.02
SER                 -0.04 -0.03 0.01 0.07 0.07
THR                  0.06 0.05 0.13 0.21
TRP                   0.48 0.35 0.26
TYR                    0.42 0.37
VAL                     0.59
  1. An example of one of the contact-type scoring matrices used in this work. The scores are defined as described in the Methods Section. In this matrix residue-residue contacts were defined using a 12 Å distance threshold between C β atoms and using a sequence separation filter to remove short-range interactions.