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Table 1 Statistics on geometry, energy and NMR data of the EETI-II and lin-MCoTI solution structures

From: Knottin cyclization: impact on structure and dynamics

 

lin-MCoTIa

EETI-IIa

Experimental constraints

Distancesb

  

   short

78

71

   medium & long range

167

122

Dihedralsc

  

   Phi -90/-40°

17, 18

17, 18, 22

   Phi -160/-80°

10, 14, 15, 20, 25, 31

10, 12, 14, 15, 20, 24, 25, 26, 29, 31

   Chi1 120/270°

7, 26

7,26

   Chi1 -120/0°

17, 20, 24, 31, 32

17, 19, 20, 24, 31, 32

   Chi1 0/120°

14,29

29

Constraint violations d

Distances

  

   number > 0.2 Å

0

0

   number < 0.2 Å

6.8 (0.7)

2.9 (0.9)

   maximum (Å)

0.17 (0.02)

0.15 (0.02)

Dihedral

  

   number > 2°

0

0

AMBER energies (kcal mol -1 )

Bond

15.15 (0.24)

13.51 (0.33)

Angle

42.8 (1.3)

39.90 (1.48)

Dihedral

238.9 (1.2)

224.2 (2.3)

van der Waals

-177 (1.8)

-163.9 (2.2)

Electrostatic

-1494.5 (17)

-1738.5 (34)

Generalized Born

-727.2 (14.3)

-446.0 (30.8)

Surface based

10.7 (0.2)

10.7 (0.3)

Total AMBER

-827.3 (2.5)

-799.6 (2.0)

Constraint

3.08 (0.29)

1.67 (0.23)

PROCHECK statistics

Residues in most favored regions (A, B, L)

91.1%

95.1%

Residues in additional allowed regions (a, b, l, p)

8.9%

4.9%

Deviations from ideal geometry

Bond

0.010 (10-4)

0.010 (10-4)

Angle

1.88 (0.032)

1.89 (0.040)

  1. aValues in parentheses indicate standard deviations. bNumber of constraints. cResidue numbers. Residues in italic correspond to constraints that are not present in both compounds. dAverage distance violations in Ã….