BMC Structural Biology

Table 1 Templates for Each of the Targets Modelled.

From: Comparative modelling by restraint-based conformational sampling

	PID
Family	1	2	3	4
Parv ^§*	62.0	55.1	58.7	53.8
1pvaa	5cpv	1pal	5pal	1a75a
Ghf22 ^§	69.9	35.8	38.2	45.5
1hml	1hfx	1lz3	1lmn	1jug
Cyt3 ^§	86.9	52.3	40.2	29.9
2cdv	2cym	1wad	3cyr	2cy3
MHC ^§	59.8	7.3	11.0	8.9
1fv1b	1iakb	1iaka	1fnga	1fv1a
Flav ^§*	48.8	33.9	28.6	22.5
1flv	1ag9a	2fcr	1akr	5nll
Phos ^§	36.9	40.2	40.7	34.7
1bp2	1vpi	1aokb	1vapa	1ppa
Fabp ^§	32.1	29.0	30.5	19.1
1ifc	1hmt	1lif	1opba	1mdc
Resp ^§	32.2	25.0	22.6	23.5
1kgsa	1b00a	1dz3a	1tmy	1qkka
Asp ^§*	54.8	40.2	26.0	27.6
3app	4ape	4apr	1smra	1mpp
Glob ^§*	87.6	26.0	21.1	20.6
1ymb	1emy	2hhbb	1spgb	1ecd
Az	59.4	69.8	53.5	61.7
2azzaa	1joi	1rkra	1cuoa	1jzga
Blm	43	37.1	39.5	42.2
4blma	3blm	1btl	1mfo	1bul
Cytc	57.7	53.2	45.8	32.1
1yea	2pcbb	1ccr	1cry	1cxc
Egf	32.4	27	27	21.6
1esl	1dan1	1dan2	1rfnb	1hcgb
Fn3	34.8	25.3	20.9	22.5
1fnf2	1fnf3	1fnf1	1fnf4	1ten
Gluts	31.4	27.6	28.6	28.1
17gsa	1guka	1gtua	1guha	1gula
Gtp	64.7	48.8	29.9	32.3
1kao	1guaa	3p21	1mh1	1ftn
Igvar-h	46	43.9	42.9	42.6
1faihv	8fabhv	2fbjhv	2fb4hv	7fabhv
Igvar-l	73.7	68.7	57.3	45.4
2fb4lv	2rhelv	2mcglv	8fablv	3hflv
Ltn	89.9	88.5	47.8	41.6
2ltn	1len	1loe	1lte	1avba
Phc	54.4	55	37.3	33.8
1phnb	1liab	1b8db	1allb	1alla
Sh3	33.3	33.3	31.6	29.6
1shg	1shfa	2src	1qcfa	1lcka
Tim	70.3	56.6	44.7	68.5
1amk	5tima	1ypia	1ydva	1tcda

Members of the homologous families (given by their Homstrad abbreviation) used to model the target are shown with the target and its PDB code in the first column. The percentage sequence identity and the PDB code of the four templates used to model on is given in the subsequent columns. The four families used to parameterise are indicated by *, while the ten families that were used to explore the effect of PID are indicated by §.

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