Table 1 Identification of the ligase family to which belongs DpRNLa
From: Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2
Family | PFAM | D. papillatum DpRNL | N. gruberi XP_002674912.1 | T. brucei KREL1 | T. brucei KREL2 |
|---|---|---|---|---|---|
DNA ligase | |||||
 [N] ATP dependent | PF01068 | 3.30 × 10−5 | 2.60 × 10−5 | 1.00 × 10−3 | 1.60 × 10−6 |
 [N] NAD dependent | PF01653 | 2.20 × 10−2 | 2.90 × 10−2 | – | 4.70 × 10−1 |
RNA ligase | |||||
 [N] Rnl1 defense, splicing | PF09511 | 2.70 × 10−1 | 1.30 × 10−2 | 3.40 × 10−1 | 4.00 × 10−1 |
  [N] Rnl2 editing | PF09414 | 4.90 × 10−12 | 3.20 × 10−9 | 7.90 × 10−55 | 4.30 × 10−53 |
 [N] Capping | PF01331 | 2.70 × 10−1 | 1.70 × 10−1 | 9.10 × 10−3 | 2.10 × 10−1 |
 LigT | PF02834 | – | – | – | – |
 RtcB splicing | PF01139 | – | – | 4.80 × 10−1 | – |