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Table 2 Prediction accuracy for the Vα/Vβ association angles modeled without pMHC

From: DynaDom: structure-based prediction of T cell receptor inter-domain and T cell receptor-peptide-MHC (class I) association angles

ESa Variantsb CR c CE d
  Q R # % # %
MT00 off off 71 94.7 63 84.0
MT01 off on 71 94.7 66 88.0
MT10 on off 72 96.0 64 85.3
MT11 on on 72 96.0 67 89.3
MT *11 on on 47 97.9 43 89.6
  1. aEvaluation setting label
  2. bVariants: Q = glutamine carboxamide group orientation correction, R = rigid body position restraint
  3. cAbsolute and relative prediction rate according to the RMSD based criterion (i.e., CR) in data set DST (75 structures). In the particular case of MT *11, the prediction was performed on the DST * set (48 structures, without biological units). For each prediction run, the 11 models are ranked by RMSD and a success is counted if the selected structure has an RMSD value lower than 2 Å
  4. d Same as c) using the energy criterion to rank the 11 structures and select the best. The prediction is considered as successful if the selected structure has an RMSD value lower than 2 Å