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Table 3 SRIs predicted from experiment and calculated from structures for proteins and models

From: An improved protein structure evaluation using a semi-empirically derived structure property

Protein name Method to obtain SRI Models SRI
Albumin Predicted through experiment 1ao6 15.10 16.08 22.41 19.45 18.14 9.48 15.04 7.80
calculated 1ao6 8.22 12.68 12.31 7.70 9.91 9.27 10.09 11.62
1 9.43 11.42 7.45 12.94 13.06 9.81 7.84 9.92
2 14.43 11.44 7.11 12.88 11.72 11.68 9.20 9.21
3 8.80 11.27 7.18 13.46 13.82 10.34 9.35 8.29
4 11.03 15.31 13.86 8.48 14.31 8.76 7.41 11.17
5 9.40 11.46 8.55 13.69 13.45 9.64 8.41 9.70
Cytochrome c Predicted through experiment 1new 5.38 5.83 4.70 2.55 5.11 4.19 3.40 3.70
calculated 1new 3.45 5.45 4.24 2.02 3.35 2.88 3.47 3.74
1 4.93 3.77 4.33 1.07 3.11 3.27 3.60 4.07
2 4.01 0.00 1.83 5.01 3.29 3.40 3.99 3.42
3 4.41 7.79 1.75 3.77 2.90 3.32 2.13 3.95
4 3.63 3.58 4.10 1.13 3.66 3.37 4.71 3.97
5 4.88 4.28 3.37 3.75 2.56 3.07 3.60 4.38
Ferritin Predicted through experiment 1ro3 4.12 5.23 4.99 3.08 6.33 3.14 3.66 3.23
calculated 1ro3 0.02 3.20 1.47 0.11 2.14 1.54 2.56 1.77
1 1.73 3.01 1.38 5.41 3.58 0.61 4.92 1.74
2 6.31 3.74 5.98 0.90 1.54 4.50 0.00 4.84
3 2.78 2.66 3.12 4.61 2.77 2.82 3.35 1.37
4 6.43 0.00 7.66 3.60 0.91 3.39 1.42 2.90
5 4.15 2.26 1.90 5.25 3.62 1.79 3.25 0.14
Lysozyme Predicted through experiment 2vb1 3.51 4.29 5.36 4.05 2.84 4.06 4.84 3.93
calculated 2vb1 4.19 3.32 5.05 5.32 4.23 3.05 2.92 3.83
1 4.81 4.51 2.77 3.07 4.24 3.12 3.74 3.83
2 4.06 4.45 2.97 3.30 4.28 2.93 3.63 3.67
3 3.86 4.47 2.79 3.26 4.51 3.06 3.89 3.84
4 4.23 4.49 3.84 3.16 4.33 3.01 3.65 3.97
5 5.81 4.32 2.93 3.03 4.55 2.42 3.76 4.00
Insulin Predicted through experiment 2h8b 4.59 5.37 5.30 6.23 3.67 4.19 3.51 5.39
calculated 2h8b 1.66 6.09 4.07 3.96 2.54 3.20 1.92 4.20
1 2.07 7.54 5.77 2.12 9.05 2.96 3.96 5.67
2 5.53 4.82 3.14 1.55 8.68 5.22 2.71 1.91
3 5.75 2.87 2.42 5.13 6.77 3.96 2.11 4.96
4 7.57 3.27 6.87 2.72 5.49 4.43 1.76 5.99
5 6.66 3.71 4.77 2.86 1.76 3.98 3.04 5.26
Hemoglobin Predicted through experiment 1a3n 5.95 8.82 8.59 10.99 9.28 4.96 8.71 8.36
calculated 1a3n 7.80 8.31 8.69 10.99 8.73 6.31 9.10 6.73
1 8.85 9.44 9.54 10.29 7.77 9.74 7.95 11.05
2 9.12 6.62 9.65 8.43 4.89 7.73 8.46 9.05
3 9.00 5.55 9.52 7.94 4.98 7.69 8.47 8.94
4 7.09 8.35 8.26 8.80 8.40 6.47 9.16 6.49
5 9.12 6.62 9.65 8.43 4.89 7.73 8.46 9.05