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Table 4 Performance of QRNAS for RNAs with unknown reference structures. MolProbity scores of “before” and “after” QRNA optimizations of the models generated in the Bujnicki group for RNA-Puzzles # 6

From: QRNAS: software tool for refinement of nucleic acid structures

Models Clashscores Bad conformations [%] Bad bonds [%] Bad angles [%]
Before After Before After Before After Before After
6_Bujnicki_1 4.95 0.55 25.00 11.31 0.07 0.00 2.35 0.52
6_Bujnicki_2 8.99 1.28 23.81 14.88 0.02 0.00 2.86 0.63
6_Bujnicki_3 9.36 1.10 25.60 15.48 0.20 0.00 3.52 0.51
6_Bujnicki_4 12.66 1.83 26.19 17.86 0.22 0.00 4.25 0.49
Average 8.99 1.19 25.15 14.88 0.13 0.00 3.25 0.54