Table 4 Performance of QRNAS for RNAs with unknown reference structures. MolProbity scores of “before” and “after” QRNA optimizations of the models generated in the Bujnicki group for RNA-Puzzles # 6
From: QRNAS: software tool for refinement of nucleic acid structures
Models | Clashscores | Bad conformations [%] | Bad bonds [%] | Bad angles [%] | ||||
|---|---|---|---|---|---|---|---|---|
Before | After | Before | After | Before | After | Before | After | |
6_Bujnicki_1 | 4.95 | 0.55 | 25.00 | 11.31 | 0.07 | 0.00 | 2.35 | 0.52 |
6_Bujnicki_2 | 8.99 | 1.28 | 23.81 | 14.88 | 0.02 | 0.00 | 2.86 | 0.63 |
6_Bujnicki_3 | 9.36 | 1.10 | 25.60 | 15.48 | 0.20 | 0.00 | 3.52 | 0.51 |
6_Bujnicki_4 | 12.66 | 1.83 | 26.19 | 17.86 | 0.22 | 0.00 | 4.25 | 0.49 |
Average | 8.99 | 1.19 | 25.15 | 14.88 | 0.13 | 0.00 | 3.25 | 0.54 |