Figure 2

Examples of our ab initio predictions. Five of the examples were predictions submitted for CASP4; the sixth (T102/as48) is a "postdiction" using the actual secondary structure assignment that was available to all CASP4 predictors (our CASP4 submission for this target used predicted secondary structure that was only 60% accurate). The experimental structure is on the left and the model is on the right. We were able to make topologically accurate predictions (≈ 6.0 Å C_α RMSD) for 9 out of 11 targets modelled. Targets with largely helical content are modelled well, with predictions as accurate as 4.0 Å C_α RMSD for 80 residues between the model and the experimental result. Models considered are given in Table 3.